We need to know either what tool you intend to use on the data, or what formats you can use in whatever next steps you plan to take, before we can give you useful specific advice. For example, we don't currently have a command to put surface coordinates into a text file, though there is a possible workaround.
You can get the data for just the left amygdala, as a nifti-1 volume, like this: wb_command -cifti-separate tfMRI_EMOTION_LR_Atlas.dtseries.nii COLUMN -volume AMYGDALA_LEFT output_left_amygdala.nii.gz -roi roi_left_amygdala.nii.gz -crop This will create the files "output_left_amygdala.nii.gz" and "roi_left_amygdala.nii.gz", which will be cropped to the smallest size that contains all of the left amygdala, to reduce the file size (if you need the full original voxel grid, remove the "-crop" option). See here for full usage: http://humanconnectome.org/software/workbench-command.php?function=-cifti-separate Tim On Wed, Feb 18, 2015 at 8:17 PM, Peka Savayan <[email protected]> wrote: > Hi Timothy Coalson, > > > Thank you for your response to my question. > > > Can you please give me examples, along with the specific Workbench > commands? > > I would like to get unaveraged time series with coordinates for the left > cuneus and left amygdale, for example. > > > Thank you for your time and efforts. > > > Best wishes, > > Peka > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
