Hello,
I would appreciate if anyone can help me identify the atlas used
in fMRI pipeline.

I believe FLIRT-FNIRT combination uses MNI152 nonlinear 6th generation
(http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin6)
which has the dimensions:
193 x 229 x 193

HCP fMRI timeseries has the image dimensions:
91 x 109 x 91

I checked out the HCP documents and Neuroimage 80 papers and
unfortunately could not find an explanation.

Clarifications will be highly appreciated.

Thanks in advance,

-- 
Alpay Özcan, D.Sc.
Research Assistant Professor
Arlington Innovation Center:
Health Research
Virginia Polytechnic Institute
and State University
900 N. Glebe Road
Arlington VA, 22203, USA

Tel: (571) 858-3204
http://aic.ncr.vt.edu/~alpay
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