Hi,
I am trying to run dtifit on the HCP data through FSL, using the following bash
script:
for dir in /mnt/win/HCP/*;
do
(cd $dir/T1w/Diffusion && dtifit -k data -o data_dtifit -m
nodif_brain_mask -r bvecs -b bvals);
done
Except it won't run to completion; it will instead hang indefinitely after
completing the first participant and the NAS I am connected to appears to hang
on this connection. I have done some troubleshooting on this but I am
completely stumped. This is my first attempt at bash scripting and FSLDTI.
Any help would be appreciated,
_______________________________________
Bryan Chiu
Undergraduate Research Assistant
Aging, Mobility, and Cognitive Neuroscience Lab
Djavad Mowafaghian Centre for Brain Health
Department of Physical Therapy
Faculty of Medicine
University of British Columbia
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