Re: [HCP-Users] L-R or R-L phase encoding?

[Glasser, Matthew]

We use all four resting state runs and we use the CIFTI ${fMRIName}_Atlas_hp2000_clean.dtseries.nii data which has been cleaned with ICA+FIX.  When using runs with a different phase encoding direction, it is important to remove the mean image first.  We then temporally concatenate multiple runs.   Peace, Matt. From: mo mo <mo7278231r...@yahoo.com> Reply-To: mo mo <mo7278231r...@yahoo.com> Date: Tuesday, May 26, 2015 at 7:00 AM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] L-R or R-L phase encoding? hi all In connectome fMRI data,what is difference between R-L phase encoding and L-R phase encoding? which one should i use in my analysis?or should i combine them somehow? there is also an other file named rfMRI_REST1_LR_hp2000_clean.nii,i am confused,which file should i use in my analysis? thanks    _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users   The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users