Hello experts, I am trying track from a seed surface roi to all WM surface vertices using matrix2 mode in probtackx2 using data from the HCP. I have followed the guide on how to convert surfaces using the surf2surf command where necessary. However I get this error when running probtrackx2
Done loading samples. Image Exception : #22 :: ERROR: Could not open image ../fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted I am not sure what is wrong, the file is definitely there. Moreover when I take this file as the seed (-x ../fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii), there is no error when loading the seeds: Running in seedmask mode load seeds read gifti done. Here is the full command: probtrackx2 -x L.STS.fsl.gii --onewaycondition --omatrix2 --target2=../fsaverage_LR32k/102816.L.white.32k_fs_LR.surf.gii -P 50 --forcedir --dir=./test_surf_track_STS_Lwhite -s ../Diffusion.bedpostX/merged -m nodif_brain_mask.nii.gz --seedref=nodif_brain_mask.nii.gz Thanks for the help! -Maarten _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
