|
I don't know if this is it, but off the top of my head, how exactly did you set up your SUBJECTS_DIR? I assume that you are trying to aggregate stats into a table across a number of subjects after having downloaded the "Structural Extended" packages?
The location of the FS data in the HCP file structure (<subj_ID>/T1w/<subj_ID>) isn't directly compatible with the expectation in FS tools that the subject level FS data will all reside within a common "SUBJECTS_DIR". To get around that, you can make a single
directory with symlinks to all the <subj_ID/T1w/<subj_ID> directories.
If that's not the issue, then yes, the FS list is probably your best location for further assistance.
cheers,
-MH
--
Michael Harms, Ph.D.
-----------------------------------------------------------
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave.
Tel: 314-747-6173
St. Louis, MO 63110
Email: [email protected]
From: <Glasser>, Matthew <[email protected]>
Date: Wednesday, November 25, 2015 3:59 PM To: levi solomyak <[email protected]>, "[email protected]" <[email protected]> Subject: Re: [HCP-Users] Qdec questions You might want to cross-post this to the FreeSurfer list unless there is someone on the HCP list familiar with qdec, assuming that you’ve downloaded the structural extended packages.
Peace,
Matt.
From: <[email protected]> on behalf of levi solomyak <[email protected]>
Date: Wednesday, November 25, 2015 at 12:45 PM To: "[email protected]" <[email protected]> Subject: [HCP-Users] Qdec questions Dear experts,
I've been attempting to generate a stats data table in qdec, but each time I get a "Index Error: list index is out of range" error. This is occurring when it is trying to parse the .stats file.
I've made sure that the files all line up exactly with the qdec table and that SUBJECTS_DIR is properly sourced so I'm not sure how to fix this problem. Any help would be greatly appreciated!
Thank you,
LS
_______________________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ |
- [HCP-Users] Qdec questions levi solomyak
- Re: [HCP-Users] Qdec questions Glasser, Matthew
- Re: [HCP-Users] Qdec questions Harms, Michael
