Dear HCP Peeps, I have a parcellation in native space that I would like to project to MNI space. It seems from the Pipelines code that this is taken care of by OneStepResampling.sh, but I can't quite distill the legion inputs and outputs of this command down to the flirt inputs and flags I need.
So, specifically, what would be the flirt command to project T1w/T1w_acpc_dc.nii.gz to MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_hp2000_clean.nii.gz (presumably this is just the projection to MNINonLinear/T1w.nii.gz + reslicing to fMRI target?) Things I'm not sure of: - location of the correct affine registration .mat file - which nonlinear warps - reslicing to fMRI dimensions (target image, or just tell it the dimensions?) - other stuff I might have missed Thanks, John -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics University of Sydney _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
