So, you can make cifti files that contain white matter, but they won't match up to our grey matter cifti files. If you want to take the past of your measures that is in grey matter and put that into cifti, you first need to use -volume-to-surface-mapping for both hemispheres, then you can use -cifti-create-dense-from-template or similar.
Tim On Feb 1, 2016 7:20 AM, "Stephen Smith" <[email protected]> wrote: > Hi - so you have estimated in FA, MD, etc in grey matter? > Note that CIFTI doesn't cover white matter. > Cheers. > > > > On 1 Feb 2016, at 06:01, Georg Kerbler <[email protected] > <[email protected]>> wrote: > > Hi, > > I would like to convert FA/MD/AD/etc. images which I calculated in T1w > space, into CIFTI's, in order to correlate/overlay them with e.g. beta-maps > from functional tasks. > > What is the best way to do this? > > Thanks for your help, > Best, > Georg > > P.s.: So far I used 'wb_command -cifti-convert -from-nifti <nifti in> > <template cifti> <cifti out>'; however opening the resulting image in > wb_view doesn't display anything. > (Prior to using the command I transformed the DTI images into MNInonlinear > space - by registering them to the T1 in the MNInonlinear folder and then > warping the images) > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > --------------------------------------------------------------------------- > Stephen M. Smith, Professor of Biomedical Engineering > Head of Analysis, Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK > +44 (0) 1865 222726 (fax 222717) > [email protected] http://www.fmrib.ox.ac.uk/~steve > --------------------------------------------------------------------------- > > Stop the cultural destruction of Tibet <http://smithinks.net> > > > > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
