An easy way to do this would be to use the whole brain mask and wb_command -volume-label-import
With the following label list file labellist.txt: OTHER 1 255 255 255 255 Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Timothy Coalson <[email protected]<mailto:[email protected]>> Date: Monday, February 1, 2016 at 1:37 AM To: John Plass <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] How do you produce a volume of cifti structure labels for -estimate-fiber-binghams? So, the output of the command is actually a CIFTI file, so it needs similar volume structure information as is used in making other cifti files - in this case, though, you want white matter, and probably from the individual's segmentation, rather than the atlas structures used in the grayordinate space. Tim On Jan 31, 2016 10:19 PM, "John Plass" <[email protected]<mailto:[email protected]>> wrote: Perhaps I'm missing something, but its not immediately apparent to me how to do this. Also, out of curiosity, why is this information necessary for the function? Thanks! John _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
