Yes there are. Have a look at the ${GitRepo}/global/templates directory. See
if using the 0.8mm templates helps.
Peace,
Matt.
From:
<[email protected]<mailto:[email protected]>>
on behalf of "Shams, Z. (Zahra)"
<[email protected]<mailto:[email protected]>>
Date: Wednesday, February 24, 2016 at 5:10 AM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: [HCP-Users] 0.8 template?Missing Some parts of the cortex in brain
extraction?
Dear all,
I've just started working with HCP structural pipeline. I've got two questions!
1) In PreFreeSurfer step for processing my 0.8mm T1w and T2w images, I'm
wondering if there are 0.8mm templates (in order to prevent upsampling my
output to 0.7mm) I can use instead of those 0.7mm templates.
2) Output of the brain extraction step missed some small parts of the
cortex, how can I improve the results?
Many thanks for your time,
Xara
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