Hi I have never used PALM but I will try to to it
Thanks a million! 2016-03-04 11:30 GMT-05:00 Donna Dierker <[email protected]>: > Hi Catalina, > > It's been a while since I've used PALM on CIFTI data, so the support may > have evolved since then, but last summer I was using wb_command's > cifti-separate feature to export cortical left and right GIFTI and > subcortical NIFTI for input into PALM. I used scripts like these, which > might not be perfect, and probably won't be suitable for your exact > circumstances: > > http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/TFCE/PALM/palm_stuff.zip > login pub > password download > > PALM's surface-based TFCE takes a mean midthickness surface and associated > mean vertex areas to compute the surface area used in the algorithm. Those > can be your study-specific ones or HCP averages, which is what these > scripts use. > > PALM's learning curve is non-trivial, but it handles family structure, so > it's worth the effort. Anderson Winkler supports PALM on the FSL list, but > the wiki link Matt provided below answers many questions. > > Cheers, > > Donna > > > On Mar 3, 2016, at 8:29 PM, "Glasser, Matthew" <[email protected]> wrote: > > > I would recommend using these files: > > > > > ${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.MyelinMap.32k_fs_LR.dscalar.nii > > > > And FSL’s PALM tool for the stats: > > > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM > > > > Perhaps others on the list can give some more assistance from here. > > > > Peace, > > > > Matt. > > > > From: <[email protected]> on behalf of Catalina > Bustamante <[email protected]> > > Date: Thursday, March 3, 2016 at 11:50 AM > > To: "[email protected]" <[email protected]> > > Subject: [HCP-Users] Group analysis for Myelin Maps > > > > Hi, > > > > I would like to make group analysis and comparison between groups for > myelin maps created with the HCP Pipelines. I haven´t found an script or > documentation of the right way to do it; could you help me finding the way > to do it? > > > > Thanks a million! > > > > _______________________________________________ > > HCP-Users mailing list > > [email protected] > > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > _______________________________________________ > > HCP-Users mailing list > > [email protected] > > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
