Vasudev,
> I would like to know if the "acpc_dc2standard" and
> "standard2acpc_dc" atlas was provided by HCP, or whether they are
> output generated from Freesurfer.sh script,
The file acpc_dc2standard.nii.gz is generated in the
AtlasRegistrationToMNI152_FLIRTandFNIRT.sh script which is invoked by
the PreFreeSurferPipeline.sh script.
It is subsequently used in the PostFreeSurferPipeline.sh script and in
the GenericfMRIVolumeProcessingPipeline.sh script.
If you search in your pipelines directory for acpc_dc2standard in all files,
you should see something like:
[HCPpipeline@login01 Pipelines-3.6.0]$ find . -exec grep --with-filename
"acpc_dc2standard" {} \;
./PreFreeSurfer/PreFreeSurferPipeline.sh: --
owarp=${AtlasSpaceFolder}/xfms/acpc_dc2standard.nii.gz \
./PostFreeSurfer/PostFreeSurferPipeline.sh:AtlasTransform="acpc_dc-
2standard"
./fMRIVolume/GenericfMRIVolumeProcessingPipeline.sh:AtlasTransform="acp-
c_dc2standard"
[HCPpipeline@login01 Pipelines-3.6.0]$
The file standard2acpc_dc.nii.gz file is similarly generated in the
AtlasRegistrationToMNI152_FLIRTandFNIRT.sh script and subsequently used
in the PostFreeSurferPipeline.sh script.
> also could you please let
> me know if the "acpc_dc_restore" files which is used as naming
> convention in Postfreesurfer script are outputs generated by
> freesurfer.sh ?.
The files named *acpc_dc_restore* are generated and used by the
PreFreeSurferPipeline.sh script. They are also used as inputs to several
subsequent pipelines including FreeSurferPipeline.sh,
PostFreeSurferPipeline.sh, and GenericfMRIVolumeProcessingPipeline.sh.
Regards,
Tim
--
Timothy B. Brown
Business & Technology Application Analyst III
Pipeline Developer (Human Connectome Project)
tbbrown(at)wustl.edu
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