Vasudev, > I am incurring segmentation fault error after during the course of > running Freesurferpipeline > > Following is the error > > /home/vasudev/Documents/Pipelines- > master/FreeSurfer/scripts/FreeSurferHiresPial.sh: line 48: 24964 > Segmentation fault (core dumped) mris_make_surfaces -nsigma_above > 2 -nsigma_below 3 -aseg aseg.hires -filled filled.hires -wm wm.hires > -mgz -sdir $SubjectDIR -orig white.deformed -nowhite -orig_white > white.deformed -orig_pial pial -T2dura "$mridir"/T2w_hires.norm -T1 > T1w_hires.norm -output .T2 $SubjectID lh " > > I am even attaching the log files generated during segmentation > process > ,kindly let me know the reason for this error I was unable to see anything in the log files that you attached that would help me understand why you are getting a segmentation fault. Have you previously been able to successfully run the PreFreeSurferPipeline.sh script? Or are you still having the problems with that mentioned in your previous messages? If you haven't yet successfully run the Pre-FreeSurfer Pipeline, then I would suggest you get that to complete without problems before trying to run the FreeSurfer pipeline. Regards, Tim -- Timothy B. Brown Business & Technology Application Analyst III Pipeline Developer (Human Connectome Project) tbbrown(at)wustl.edu ________________________________________
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