Thanks for pointing out the hard-coded bug. Thanks,
Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Timothy Coalson <[email protected]<mailto:[email protected]>> Date: Monday, April 4, 2016 at 4:16 PM To: arulspam <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] PostFix bugs Matlab is known to do some strange things to dynamic linking at least on linux for things run with system() or similar. It might be appropriate to write a workaround passthrough script for binaries/shell scripts to set/clear LD_LIBRARY_PATH and related, specifically to deal with matlab's strangeness, something like: #!/bin/bash unset LD_LIBRARY_PATH LD_PRELOAD exec "$@" Which would then be called from matlab like "system('matlab_run.sh wb_command -whatever');" . However, I'm not really sure what the cleanest way to deal with this situation is. Tim On Mon, Apr 4, 2016 at 2:39 PM, arulspam <[email protected]<mailto:[email protected]>> wrote: Dear HCPers, Maybe a couple bugs in PostFix. I had to add paths to wb_command lib dependencies to the front of the LD_LIBRARY_PATH in Compiled_prepareICAs/distrib/run_prepareICAs.sh, otherwise I got errors such as: /usr/bin/wb_command: /usr/local/MATLAB/MATLAB_Compiler_Runtime/v81/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by /usr/bin/wb_command) /usr/bin/wb_command: /usr/local/MATLAB/MATLAB_Compiler_Runtime/v81/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /usr/bin/wb_command) Also, PostFix.sh accepts highpass as an arg but there some instances in the script where hp2000 is explicitly set, so it would likely not work correctly if hp is not 2000. Cheers, A. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
