Thank Tim and Jennifer very much for your answers! I have one more question about the spatial operation commands of Connectome Workbench. If I use the commands “-cifti-gradient” or “-cifti-smoothing” for processing HCP group-averaged maps, should I use the atlas midthickness surfaces (“Conte69.L.midthickness.32k_fs_LR.surf.gii” and “Conte69.R.midthickness.32k_fs_LR.surf.gii”) or HCP S900 group-averaged surfaces (“S900.L.midthickness_MSMAll.32k_fs_LR.surf.gii” and “S900.R.midthickness_MSMAll.32k_fs_LR.surf.gii”) for the input arguments of these commands?
Thank you! From: [email protected] To: [email protected]; [email protected] Subject: Re: [HCP-Users] Some questions about the usage of Connectome Workbench Date: Fri, 20 May 2016 21:22:16 +0000 HI Aaron, In answer to your #2 question... There are S900 group average data and surfaces available in the 900 Subjects Group Average Data section of the HCP S900 project page in ConnectomeDB https://db.humanconnectome.org/data/projects/HCP_900 Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 [email protected] www.humanconnectome.org From: [email protected] <[email protected]> on behalf of Aaron C <[email protected]> Sent: Friday, May 20, 2016 3:23:48 PM To: [email protected] Subject: [HCP-Users] Some questions about the usage of Connectome Workbench Dear HCP experts, I have some questions about the usage of Connectome Workbench for displaying custom group-level ICA maps stored in a *.dtseries.nii file. 1. I am currently able to save the figure (similar to the format of the figure displayed in Scene 3 of Connectome Workbench v1.0 Tutorial) of each component map of a group ICA *.dtseries.nii file by clicking on “File>Capture Image” manually and then change to the next component map and do the same again manually, but this way is petty time-consuming if I have a lot of ICA components (frames) in a *.dtseries.nii file. How could I batch export these surface view figures via Connectome Workbench by using some commands? 2. I found R440 group-averaged surface files in the WB 1.0 Tutorial Dataset. However, are there any S900 group-averaged surface files available for use in the HCP dataset? 3. How could I get the anatomical region name (in terms of Brodmann or any other brain atlases) of each grayordinate above a user-defined threshold in a custom map using Connectome Workbench (similar to the function of clicking “Report” button of xjView)? Thank you very much! _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
