You will then need to learn how to write a script to be submitted to the SLURM scheduler. I am not familiar with the SLURM scheduler, but from very briefly looking at the documentation that you supplied a link to, I would think that the general form of a script for the SLURM scheduler would be: #!/bin/bash #... SLURM Scheduler directives ... e.g. #SBATCH ... telling the system #such things as how much memory to expect to use #and how long you expect the job to take to run #... initialization of the modules system ... e.g. source #/etc/profile.d/modules.sh #... loading of the required software modules ... e.g. module load fsl ... command to run the HCP Pipeline Script you want to run (e.g. Structural Preprocessing, MEG processing, etc.) for the subject and scans you want to process Once you've written such a script, (for example named myjob.cmd), it appears that you would submit the job using a command like: sbatch myjob.cmd At the link that you provided, there is a section titled "Introductory Articles and Tutorials by LRZ" I would suggest you follow the links provided in that section, read that documentation, and submit any questions you have to the service desk for the LRZ (a link to the service desk is also on the page you supplied a link to.) Tim On Tue, May 24, 2016, at 13:00, Dev vasu wrote: > Dear Sir, > > I have the cluster available , following is the link to it : > http://www.lrz.de/services/compute/linux-cluster/ > > > Thanks Vasudev > > > > > > On 24 May 2016 at 19:43, Timothy B. Brown <[email protected]> wrote: >> Do you already have a cluster set up and available, or are you >> looking to set up the cluster? >> >> If you are looking to set up a cluster, do you have the group of >> machines that you want to use for the cluster already available or >> are you thinking of setting up a cluster "in the cloud" (e.g. a group >> of Amazon EC2 instances)? >> >> Tim >> >> On Tue, May 24, 2016, at 12:18, Dev vasu wrote: >>> Dear Sir, >>> >>> Currently i am running HCP Pipelines on a Standalone computer but i >>> would like to set up the pipeline on a Linux cluster, if possible >>> could you please provide me some details concerning procedures that >>> i have to follow . >>> >>> >>> >>> Thanks Vasudev >>> _______________________________________________ >>> HCP-Users mailing list [email protected] >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> -- >> Timothy B. Brown >> Business & Technology Application Analyst III >> Pipeline Developer (Human Connectome Project) >> tbbrown(at)wustl.edu >> ________________________________________ >> The material in this message is private and may contain Protected >> Healthcare Information (PHI). >> If you are not the intended recipient, be advised that any >> unauthorized use, disclosure, copying >> or the taking of any action in reliance on the contents of this >> information is strictly prohibited. >> If you have received this email in error, please immediately notify >> the sender via telephone or >> return mail. -- Timothy B. Brown Business & Technology Application Analyst III Pipeline Developer (Human Connectome Project) tbbrown(at)wustl.edu ________________________________________
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