Yes, Sorry Joseph. We'll get these resolved. --Mike
-----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of An Vu Sent: Thursday, July 7, 2016 1:41 PM To: [email protected] Subject: [HCP-Users] Error downloading 7T_MOVIE_2mm_fix dataset Hi, The same problem that was for the 7T_REST_fix is still occurring for the 2mm grayordinate 7T movie fix dataset. The 1.6mm downloads fine. I’ve not tried the volume data. Could you check the naming for these and related files? Best, Joseph > On Jul 6, 2016, at 10:00 AM, [email protected] wrote: > > Send HCP-Users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of HCP-Users digest..." > > > Today's Topics: > > 1. Re: HCP-Users Digest, Vol 44, Issue 3 (Aaron C) > 2. Re: HCP-Users Digest, Vol 44, Issue 3 (Harms, Michael) > 3. Re: Exact Meaning of ICA maps in 800 subjects release > (Nicola Toschi) > 4. Re: Exact Meaning of ICA maps in 800 subjects release > (Stephen Smith) > 5. Re: Exact Meaning of ICA maps in 800 subjects release > (Nicola Toschi) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 6 Jul 2016 04:06:34 +0000 > From: Aaron C <[email protected]> > Subject: Re: [HCP-Users] HCP-Users Digest, Vol 44, Issue 3 > To: "[email protected]" <[email protected]> > Message-ID: > > <bl2pr18mb0756a643715a70a5f8e8bc52da...@bl2pr18mb0756.namprd18.prod.ou > tlook.com> > > Content-Type: text/plain; charset="us-ascii" > > Dear HCP experts, > > > I have a question about the recently released 7T REST denoised volume data. > Have white matter/ventricle or global signals been removed from these 7T REST > denoised volume data? Thank you. > > ________________________________ > From: [email protected] > <[email protected]> on behalf of > [email protected] > <[email protected]> > Sent: Tuesday, July 5, 2016 1:00:01 PM > To: [email protected] > Subject: HCP-Users Digest, Vol 44, Issue 3 > > Send HCP-Users mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of HCP-Users digest..." > > > Today's Topics: > > 1. Error downloading 7T_REST_Volume_fix dataset (Parnesh Raniga) > 2. Re: Error downloading 7T_REST_Volume_fix dataset (Hodge, Michael) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 5 Jul 2016 11:34:27 +1000 > From: Parnesh Raniga <[email protected]> > Subject: [HCP-Users] Error downloading 7T_REST_Volume_fix dataset > To: [email protected] > Message-ID: > > <CAALVzbdFEsxU93jxY90qFVL=Rfx1SnpN15_XW=-cuqntdp0...@mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > Hello, > > I am trying to download the 7T REST denoised volume dataset and the > link seems to be broken with a Not Found error popping up each time I > try. Other datasets are working fine. > > Regards, > Parnesh > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 705/c9b095b8/attachment-0001.html > > ------------------------------ > > Message: 2 > Date: Tue, 5 Jul 2016 13:25:18 +0000 > From: "Hodge, Michael" <[email protected]> > Subject: Re: [HCP-Users] Error downloading 7T_REST_Volume_fix dataset > To: Parnesh Raniga <[email protected]>, > "[email protected]" <[email protected]> > Message-ID: > > <blupr0201mb144346f6a0171da1bc4b1cffc5...@blupr0201mb1443.namprd02.pro > d.outlook.com> > > Content-Type: text/plain; charset="utf-8" > > > Hi Parnesh, > > Thank you for informing us of the problem accessing the 7T Resting State > denoised volume data. We?ve found the source of the problem and should have > the link working later today. > > Regards, > > Mike > > > From: [email protected] > [mailto:[email protected]] On Behalf Of Parnesh > Raniga > Sent: Monday, July 4, 2016 8:34 PM > To: [email protected] > Subject: [HCP-Users] Error downloading 7T_REST_Volume_fix dataset > > Hello, > I am trying to download the 7T REST denoised volume dataset and the link > seems to be broken with a Not Found error popping up each time I try. Other > datasets are working fine. > Regards, > Parnesh > > _______________________________________________ > HCP-Users mailing list > [email protected]<mailto:[email protected]> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 705/c839a7ba/attachment-0001.html > > ------------------------------ > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > End of HCP-Users Digest, Vol 44, Issue 3 > **************************************** > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 706/15c3477f/attachment-0001.html > > ------------------------------ > > Message: 2 > Date: Wed, 6 Jul 2016 04:17:12 +0000 > From: "Harms, Michael" <[email protected]> > Subject: Re: [HCP-Users] HCP-Users Digest, Vol 44, Issue 3 > To: Aaron C <[email protected]>, "[email protected]" > <[email protected]> > Message-ID: <d3a1f06c.6e405%[email protected]> > Content-Type: text/plain; charset="us-ascii" > > An HTML attachment was scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 706/b0f8abb1/attachment-0001.html > > ------------------------------ > > Message: 3 > Date: Wed, 06 Jul 2016 08:26:53 +0200 > From: Nicola Toschi <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > To: hcp-users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset="utf-8" > > Hi,? > The volumetric version! > Thanks in advance,? > Nicola > > > > -------- Original message -------- > From: Stephen Smith <[email protected]> > Date: 04/07/2016 12:37 PM (GMT+01:00) > To: Nicola Toschi <[email protected]> > Cc: hcp-users <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > > HI - do you mean the grayordinate or volumetric versions? ?Cheers > > > On 4 Jul 2016, at 11:16, Nicola Toschi <[email protected]> wrote: > > Hi list,? > This may be more of a MELODIC question, but I would be grateful for any input: > In the ICA release on 800+ subjects, what is the exact mathematical meaning / > definition of the (non-binary) intensities of the different component volumes? > Are they easily relatable to a statistical map (I am looking to threshold > them to study main clusters and possibly correct for multiple comparisons)? > Thanks in advance,? > Nicola > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > ---------------------------------------------------------------------- > ----- Stephen M. Smith, Professor of Biomedical Engineering Head of > Analysis, ?Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford ?OX3 9DU, UK > +44 (0) 1865 222726 ?(fax 222717) > [email protected] ???http://www.fmrib.ox.ac.uk/~steve > ---------------------------------------------------------------------- > ----- Stop the cultural?destruction?of Tibet > > > > > > > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 706/90a610c5/attachment-0001.html > > ------------------------------ > > Message: 4 > Date: Wed, 6 Jul 2016 09:09:36 +0100 > From: Stephen Smith <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > To: Nicola Toschi <[email protected]> > Cc: hcp-users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset="utf-8" > > Hi > > Group-ICA is carried out in grayordinate space. Then: > > For each subject, subject-wise grayordinate AND volumetric maps (versions of > the group-ICA) are estimated using dual-regression, with node-timeseries > normalisation, and outputs in units of GLM betas (parameter estimates) not Z. > > These volumetric maps are then averaged across subjects to generate the > group-average volumetric maps distributed from HCP. > > So how you threshold these is up to you and depends what the intended usage > for that is....... > > Cheers. > > > >> On 6 Jul 2016, at 07:26, Nicola Toschi <[email protected]> wrote: >> >> Hi, >> >> The volumetric version! >> >> Thanks in advance, >> >> Nicola >> >> >> -------- Original message -------- >> From: Stephen Smith <[email protected]> >> Date: 04/07/2016 12:37 PM (GMT+01:00) >> To: Nicola Toschi <[email protected]> >> Cc: hcp-users <[email protected]> >> Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects >> release >> >> HI - do you mean the grayordinate or volumetric versions? >> Cheers >> >> >> >>> On 4 Jul 2016, at 11:16, Nicola Toschi <[email protected] >>> <mailto:[email protected]>> wrote: >>> >>> Hi list, >>> >>> This may be more of a MELODIC question, but I would be grateful for any >>> input: >>> >>> In the ICA release on 800+ subjects, what is the exact mathematical meaning >>> / definition of the (non-binary) intensities of the different component >>> volumes? >>> >>> Are they easily relatable to a statistical map (I am looking to threshold >>> them to study main clusters and possibly correct for multiple comparisons)? >>> >>> Thanks in advance, >>> >>> Nicola >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> [email protected] <mailto:[email protected]> >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >> >> >> --------------------------------------------------------------------- >> ------ Stephen M. Smith, Professor of Biomedical Engineering Head of >> Analysis, Oxford University FMRIB Centre >> >> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK >> +44 (0) 1865 222726 (fax 222717) >> [email protected] <mailto:[email protected]> >> http://www.fmrib.ox.ac.uk/~steve <http://www.fmrib.ox.ac.uk/~steve> >> --------------------------------------------------------------------- >> ------ >> >> Stop the cultural?destruction?of Tibet <http://smithinks.net/> >> >> >> >> >> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > > ---------------------------------------------------------------------- > ----- Stephen M. Smith, Professor of Biomedical Engineering Head of > Analysis, Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK > +44 (0) 1865 222726 (fax 222717) > [email protected] http://www.fmrib.ox.ac.uk/~steve > <http://www.fmrib.ox.ac.uk/~steve> > ---------------------------------------------------------------------- > ----- > > Stop the cultural?destruction?of Tibet <http://smithinks.net/> > > > > > > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 706/fa2c0369/attachment-0001.html > > ------------------------------ > > Message: 5 > Date: Wed, 06 Jul 2016 13:16:28 +0200 > From: Nicola Toschi <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > To: Stephen Smith <[email protected]> > Cc: hcp-users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset="utf-8" > > Great, thanks a lot,? > Nicola? > > -------- Original message -------- > From: Stephen Smith <[email protected]> > Date: 06/07/2016 10:09 AM (GMT+01:00) > To: Nicola Toschi <[email protected]> > Cc: hcp-users <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > > Hi > Group-ICA is carried out in grayordinate space. Then: > For each subject, subject-wise grayordinate AND volumetric maps (versions of > the group-ICA) are estimated using dual-regression, with node-timeseries > normalisation, and outputs in units of GLM betas (parameter estimates) not Z. > ?? > These volumetric maps are then averaged across subjects to generate the > group-average volumetric maps distributed from HCP. > So how you threshold these is up to you and depends what the intended usage > for that is....... > Cheers. > > > On 6 Jul 2016, at 07:26, Nicola Toschi <[email protected]> wrote: > > Hi,? > The volumetric version! > Thanks in advance,? > Nicola > > > > -------- Original message -------- > From: Stephen Smith <[email protected]> > Date: 04/07/2016 12:37 PM (GMT+01:00) > To: Nicola Toschi <[email protected]> > Cc: hcp-users <[email protected]> > Subject: Re: [HCP-Users] Exact Meaning of ICA maps in 800 subjects > release > > HI - do you mean the grayordinate or volumetric versions? ?Cheers > > > On 4 Jul 2016, at 11:16, Nicola Toschi <[email protected]> wrote: > > Hi list,? > This may be more of a MELODIC question, but I would be grateful for any input: > In the ICA release on 800+ subjects, what is the exact mathematical meaning / > definition of the (non-binary) intensities of the different component volumes? > Are they easily relatable to a statistical map (I am looking to threshold > them to study main clusters and possibly correct for multiple comparisons)? > Thanks in advance,? > Nicola > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > ---------------------------------------------------------------------- > ----- Stephen M. Smith, Professor of Biomedical Engineering Head of > Analysis, ?Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford ?OX3 9DU, UK > +44 (0) 1865 222726 ?(fax 222717) > [email protected] ???http://www.fmrib.ox.ac.uk/~steve > ---------------------------------------------------------------------- > ----- Stop the cultural?destruction?of Tibet > > > > > > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > ---------------------------------------------------------------------- > ----- Stephen M. Smith, Professor of Biomedical Engineering Head of > Analysis, ?Oxford University FMRIB Centre > > FMRIB, JR Hospital, Headington, Oxford ?OX3 9DU, UK > +44 (0) 1865 222726 ?(fax 222717) > [email protected] ???http://www.fmrib.ox.ac.uk/~steve > ---------------------------------------------------------------------- > ----- Stop the cultural?destruction?of Tibet > > > > > > > -------------- next part -------------- An HTML attachment was > scrubbed... > URL: > http://lists.humanconnectome.org/pipermail/hcp-users/attachments/20160 > 706/4a520eb4/attachment-0001.html > > ------------------------------ > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > End of HCP-Users Digest, Vol 44, Issue 4 > **************************************** _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
