Also, pure white and pure black appear to be reserved (as I learned when I did when converting the Gordon parcellation to annot), so those colors need to be avoided.
-- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110Email: mha...@wustl.edu On 8/18/16, 5:28 PM, "Glasser, Matthew" <glass...@wustl.edu> wrote: They actually might be depending on the precision of the color specification, as they are computed colors, rather than assigned colors. Matt. On 8/18/16, 5:23 PM, "Harms, Michael" <mha...@wustl.edu> wrote: > >One wrinkle to be aware of is that the color labels must be unique for >each parcel in FS¹s .annot format. So, if the color labels in the >HCP-MMP1.0 are not unique for *every* parcel, then the steps outlined in >that link don¹t quite get you the .annot equivalent. > >cheers, >-MH > >-- >Michael Harms, Ph.D. > >----------------------------------------------------------- >Conte Center for the Neuroscience of Mental Disorders >Washington University School of Medicine >Department of Psychiatry, Box 8134 >660 South Euclid Ave.Tel: 314-747-6173 >St. Louis, MO 63110Email: mha...@wustl.edu > > > > >On 8/18/16, 5:12 PM, "hcp-users-boun...@humanconnectome.org on behalf of A >Nunes" <hcp-users-boun...@humanconnectome.org on behalf of >adonay.s.nu...@gmail.com> wrote: > >Hi > >Meanwhile, you can take a look at this method: > >https://figshare.com/articles/HCP-MMP1_0_projected_on_fsaverage/3498446 > >The fsaverage atlas can be then projected to individual space with >surf2surf command. > >Cheers, >Adonay > >On Thu, Aug 18, 2016 at 3:01 PM, Glasser, Matthew <glass...@wustl.edu> >wrote: >> We¹ve been working on an HCP WIKI ³FAQ² entry on this topic and will >> announce it on the mailing list. If you are interested in beta testing >> this, let us know and we can send it to you. >> >> Peace, >> >> Matt. >> >> From: <hcp-users-boun...@humanconnectome.org> on behalf of "Khadka, >>Sabin" >> <sabin.kha...@hhchealth.org> >> Date: Thursday, August 18, 2016 at 2:41 PM >> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: [HCP-Users] 180 parcellation for freesurfer? >> >> Hi all- I want to use 180 parcellation from Glasser et al 2016 to >>extract >> values from subjects that are mapped into freesurfer¹s fsaverage space. >>I >> was wondering if that is possible and if 180 parcellation are converted >>into >> freesurfer compatible annotation format (or label files)? >> >> >> >> Thanks. >> >> >> This e-mail message, including any attachments, is for the sole use of >>the >> intended recipient(s) and may contain confidential and privileged >> information. Any unauthorized review, use, disclosure, or distribution >>is >> prohibited. 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