No. Peace,
Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Aaron C <[email protected]<mailto:[email protected]>> Date: Sunday, August 28, 2016 at 5:02 PM To: "Harms, Michael" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] HCP script used for residual bias field correction on myelin maps Dear HCP experts, I saw that Dr. Glasser et al.'s paper mentioned that the residual bias field of HCP Skyra data was caused by "the positioning of the head is ~ 5cm above isocenter and because of the smaller (customized 56 cm) body transmit coil making it more difficult to achieve the kind of B1 transmit homogeneity found in other whole body scanners". Are there any subjects from HCP 900 Subjects release scanned using other whole body scanners instead of this 3T Skyra system, which may not need this mandatory residual bias field correction? Thank you. ________________________________ From: Harms, Michael <[email protected]<mailto:[email protected]>> Sent: Sunday, August 28, 2016 1:52 PM To: Aaron C; [email protected]<mailto:[email protected]> Subject: Re: [HCP-Users] HCP script used for residual bias field correction on myelin maps Hi, It's in the PostFreeSurfer/scripts/CreateMyelinMaps.sh script. Look for the stuff related to "MyelinMap_BC". cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected]<mailto:[email protected]> From: <[email protected]<mailto:[email protected]>> on behalf of Aaron C <[email protected]<mailto:[email protected]>> Date: Sunday, August 28, 2016 at 11:25 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] HCP script used for residual bias field correction on myelin maps Dear HCP experts, Could I find the shell or MATLAB script used for performing residual bias field correction on myelin maps somewhere online? It's described in Fig 18 of Dr. Glasser's 2013 paper "The minimal preprocessing pipelines for the Human Connectome Project", but I cannot find the actual script from HCP pipeline scripts. Thank you. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
