I was recently adapting some of your great tfMRI analysis pipeline scripts
for use with newly collected HCP-compliant data, and I noticed a line that
I can't understand. In TaskfMRIAnalysis.v2.0.sh (called by
TaskfMRIAnalysis.sh when "new" FSL versions are detected) on line 126 it

LevelOnefsfNames=`echo $LevelOnefMRINames | sed 's/ /@/g'`

I may be misunderstanding something, so I thought I'd ask, but it seems to
me that second variable should be $LevelOnefsfNames. Most likely, it won't
cause a problem because by default the two variables are set to be
identical in the TaskfMRIAnalysisBatch.sh script.

Thanks for any input about this line.


Andrew Poppe, Ph.D.
Postdoctoral Researcher
Olin Neuropsychiatry Research Center
Institute of Living
Hartford Hospital

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