Thank you, I was using a bad input file. The command works now.
for -cifti-label-import however, I am no sure how the label file is supposed to
look. I get a malformed error:
ERROR: label list file is malformed for entry #1: test 255 255 255 255
I have 4 cortical and 1 subcortical ROIs which are colored differently on
viewing, but the cifti file contains only 1 map.
Ultimately I’d like to be able to identify and extract beta weights from each.
On Sep 20, 2016, at 2:26 PM, Glasser, Matthew
What does the input data look like?
From: "Michael F.W. Dreyfuss"
Date: Tuesday, September 20, 2016 at 1:22 PM
To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>>
Cc: "Michael F.W. Dreyfuss"
<mid2...@med.cornell.edu<mailto:mid2...@med.cornell.edu>>, Timothy Coalson
Subject: Re: [HCP-Users] ROIs and Betas from Cifti Data
OK, I tried this:
FoodGo_HCP_mesh_TFCE_palm/FoodGo_results_merged_tfce_tstat_fwep.dscalar.nii 0 0
0 0 COLUMN FoodGo_results_merged_tfce_tstat_fwep_ROIs.dscalar.nii -left-surface
Where now I am using these 900 subject average files as templates. I though the
-left-surface it was looking for was with the statistics run
The output of this is null, however. Nothing shows up on wb_view and
Map Minimum Maximum Mean Sample Dev % Positive % Negative
Inf/NaN Map Name
1 0.000 0.000 0.000 0.000 0.000 0.000
Am I doing something wrong still?
On Sep 20, 2016, at 1:59 PM, Glasser, Matthew
Presumably you have some of these if you have gotten this far?
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