Sounds like it made a temporary file for some reason, but the temporary
file was corrupt somehow (found a similar error on the freesurfer list).
You should probably ask the freesurfer list what the problem might be.
On Wed, Oct 12, 2016 at 12:27 PM, Francesco Sammartino <
> Thank you a lot.
> I found a problem in the last step. When I convert files from gii to annot
> using mris_convert : I run mris_convert --annot left.fsaverage164.label.gii
> and I get a lot of errors like 'Invalid argument
> freadFloat: fread failed
> Invalid argument
> mrisFindNeighbors: ../../../cortical/fs_L-to-fs_
> LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii.1: face.v = 0,
> but face 1 not in vertex 0 face list
> Invalid argument
> Segmentation fault (core dumped)' in the shell.
> Any suggestions?
> Thanks again
> *Francesco Sammartino MD*
> On Wed, Oct 12, 2016 at 11:18 AM, Elam, Jennifer <e...@wustl.edu> wrote:
>> Hi Francesco,
>> This has been discussed quite a bit on the list. Please see
>> and other messages on the thread, especially the discussion of the price
>> you pay in terms of spatial fidelity when you convert from surface to
>> Also see this article “The Human Connectome Project’s neuroimaging
>> approach” <http://www.nature.com/neuro/journal/v19/n9/full/nn.4361.html>
>> published in Nature Neuroscience in late August 2016 that discusses this
>> Note that FSL is currently working on getting CIFTI compatibility in
>> their next release, which should be coming out soon.
>> Jennifer Elam, Ph.D.
>> Scientific Outreach, Human Connectome Project
>> Washington University School of Medicine
>> Department of Neuroscience, Box 8108
>> 660 South Euclid Avenue
>> St. Louis, MO 63110
>> *From:* hcp-users-boun...@humanconnectome.org <
>> hcp-users-boun...@humanconnectome.org> on behalf of Francesco Sammartino
>> *Sent:* Wednesday, October 12, 2016 8:59:54 AM
>> *To:* firstname.lastname@example.org
>> *Subject:* [HCP-Users] Extract 137 RSN networks - Glasser et al. -
>> Nature 2016
>> We are aiming to integrate the new high resolution cortical parcellation
>> and the 137 resting state networks into our probabilistic tractography (FSL
>> based) pipeline.
>> Could you please tell me how should I convert to nifti labelmaps the
>> content of the file Q1-Q6_RelatedParcellation210.i
>> or direct me to a tutorial/howto on how to project those parcellation
>> information to a nifti volume?
>> We are heavily based on FSL and it would be great to convert all the
>> files in its format.
>> Thanks and sorry for the newbie question.
>> Francesco Sammartino
>> HCP-Users mailing list
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