After resampling, you can use -cifti-create-dense-from-template to make the
cifti file containing thickness data.  Then you can use -cifti-parcellate
as suggested.

Tim


On Thu, Oct 13, 2016 at 10:19 AM, Harms, Michael <mha...@wustl.edu> wrote:

>
> Hi,
> See this FAQ:
> https://wiki.humanconnectome.org/display/PublicData/HCP+
> Users+FAQ#HCPUsersF
> AQ-9.HowdoImapdatabetweenFreeSurferandHCP?
>
> That, plus -cifti-parcellate (applied to the cifti version of the
> thickness data), should do the trick.
>
> cheers,
> -MH
>
> --
> Michael Harms, Ph.D.
>
> -----------------------------------------------------------
> Conte Center for the Neuroscience of Mental Disorders
> Washington University School of Medicine
> Department of Psychiatry, Box 8134
> 660 South Euclid Ave.Tel: 314-747-6173
> St. Louis, MO  63110Email: mha...@wustl.edu
>
>
>
>
> On 10/13/16, 10:11 AM, "hcp-users-boun...@humanconnectome.org on behalf of
> 姚永成" <hcp-users-boun...@humanconnectome.org on behalf of
> yao_yongch...@icloud.com> wrote:
>
> Dear HCP users,
>
> I am new to HCP Pipelines and I wonder whether can I map cortical
> thickness data to 180 parcellation featured on nature. I have already
> calculated cortical thickness using freesurfer, then I want to calculate
> the average cortical thickness of each brain area.
>
> The latest 180 parcellation (Glasser et al) is more accurate and robusted,
> so I want to use this atlas instead of others I always use.
> Thanks a lot!
>
> Best regards,
> YC YAO
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