The Freesurfer ‘recon-all’ script writes that message to ‘stdout’, not ‘stderr’, thus it shows up in the *.o* file from your cluster management software, not the *.e* file. i.e., you need to look at both to debug problems.
cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: YC Yao <yao_yongch...@icloud.com<mailto:yao_yongch...@icloud.com>> Date: Friday, October 14, 2016 at 10:57 AM To: Michael Harms <mha...@wustl.edu<mailto:mha...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] errors with HCP_Pipelines structural processing Thank you for your prompt replay! I noticed that “error” message before, but it resides in FreeSurferPipeline.sh.o23511 which is the output logging file but not in FreeSurferPipeline.sh.e23511 which is the error message file. Therefore, I assume that it will not do harm to the result. I believe I have deleted all files except the unprocessed directory where the example data resided. I will try again later. Thanks again! Best regards, YC Yao ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
