The Freesurfer ‘recon-all’ script writes that message to ‘stdout’, not
‘stderr’, thus it shows up in the *.o* file from your cluster management
software, not the *.e* file. i.e., you need to look at both to debug problems.
Michael Harms, Ph.D.
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO 63110 Email: mha...@wustl.edu
From: YC Yao <yao_yongch...@icloud.com<mailto:yao_yongch...@icloud.com>>
Date: Friday, October 14, 2016 at 10:57 AM
To: Michael Harms <mha...@wustl.edu<mailto:mha...@wustl.edu>>
Subject: Re: [HCP-Users] errors with HCP_Pipelines structural processing
Thank you for your prompt replay!
I noticed that “error” message before, but it resides in
FreeSurferPipeline.sh.o23511 which is the output logging file but not in
FreeSurferPipeline.sh.e23511 which is the error message file. Therefore, I
assume that it will not do harm to the result.
I believe I have deleted all files except the unprocessed directory where the
example data resided. I will try again later.
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