Dear experts, I am considering the best option how to process the structural MRI data of our longitudinal study. We have patients and controls, each subject was scanned twice.
Our data meet the requirements of HCP pipelines which I would prefer to use. On the other hand, in FreeSurfer there is a special designed "longitudinal stream" for this purposes: https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing Since the FreeSurferPipeline.sh, FreeSurferHiResWhite.sh and FreeSurferHiResPial.sh mostly invoke FreeSurfer routines, there should be an option to modify these scripts to do the "longitudinal reconstruction". In most of recon-all invocations there should suffice to add directives for longitudinal stream, but the modification of FreeSurferHiResPial.sh and FreeSurferHiResWhite.sh is more tricky. I am not sure how to properly set all the parameters of mris_make_surfaces there. Do you have someone the modified scripts available or can provide guidance for proper modification of standard scripts? Regards, Antonin Skoch Institute for Clinical and Experimental Medicine National Institute of Mental Health Czech Republic _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
