Yes. Peace,
Matt. From: <[email protected]<mailto:[email protected]>> on behalf of "Shadi, Kamal" <[email protected]<mailto:[email protected]>> Date: Thursday, October 27, 2016 at 7:49 PM To: Timothy Coalson <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] Problem loading a single surface ROI with wb_view Hi Tim, Is this type of file OK though for seeding in FSL probtrackx? Many thanks for your response, Kamal. From: Timothy Coalson <[email protected]<mailto:[email protected]>> Date: Thursday, October 27, 2016 at 2:35 PM To: "Shadi, Kamal" <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] Problem loading a single surface ROI with wb_view workbench does not support combined coordinate/data gifti files, as we see it, they are non-standard. The error you got is actually just missing metadata, and that error usually appears in a dialog box where you can select the correct structure. However, it will probably fail to load that file anyway, due to its combined coordinates/data nature. I don't know what kinds of gifti the matlab implementation supports. Tim On Thu, Oct 27, 2016 at 11:56 AM, Shadi, Kamal <[email protected]<mailto:[email protected]>> wrote: Hi All, I used the following script to get separate mid-thickness ROI surfaces from MMP1.0 parcellation (In order to use in probtrackx2): mmp=Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii surf=Q1-Q6_RelatedParcellation210.L.midthickness_MSMAll_2_d41_WRN_DeDrift.32k_fs_LR.surf.gii wb_command-cifti-separate $mmp COLUMN -label CORTEX_LEFT rois.label.gii wb_command -gifti-all-labels-to-rois rois.label.gii 1 rois.func.gii wb_command -metric-merge roi<i>.func.gii -metric rois.func.gii -column <i> surf2surf -i $surf -o roi<i>.surf.gii --values=roi<i>.func.gii The script seems to run with no warnings or so. Now if I want to view the surface ROI using wb_view: wb_view roi<i>.surf.gii I get "has missing or invalid structure" error. Moreover, I cannot load the roi<i>.surf.gii file using GIFTI package in MATLAB. Is there something wrong with the above procedure? Thanks, Kamal Shadi _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
