There aren’t any surfaces specified either… Matt.
From: Timothy Coalson <[email protected]<mailto:[email protected]>> Date: Monday, October 31, 2016 at 5:29 PM To: Matt Glasser <[email protected]<mailto:[email protected]>> Cc: "Burgess, Gregory" <[email protected]<mailto:[email protected]>>, Enrico Schulz <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] surface label to 3D mask The -label-to-volume-mapping command only works on gifti label files, and he specified a cifti dlabel file instead. Use -cifti-separate first. Tim On Mon, Oct 31, 2016 at 5:26 PM, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: It doesn¹t appear that you followed the command usage for this Connectome Workbench command correctly. I would have another look at that. Peace, Matt. On 10/31/16, 3:10 PM, "[email protected]<mailto:[email protected]> on behalf of Burgess, Gregory" <[email protected]<mailto:[email protected]> on behalf of [email protected]<mailto:[email protected]>> wrote: >Please send this to >[email protected]<mailto:[email protected]> (instead >of the owners >list) >--Greg > >____________________________________________________________________ >Greg Burgess, Ph.D. >Staff Scientist, Human Connectome Project >Washington University School of Medicine >Department of Psychiatry >Phone: 314-362-7864<tel:314-362-7864> >Email: [email protected]<mailto:[email protected]> > >> On Oct 31, 2016, at 11:41 AM, Enrico Schulz >> <[email protected]<mailto:[email protected]>> >>wrote: >> >> Dear HCP community, >> >> I want to apply the recent brain parcellation to my DTI data. In order >>to do tractography I need to generate 3D masks from the label file. >> I tried the command below but received an error message: >> >> ERROR: Parse error while reading: error occurred while parsing element, >>line number: 1 column number: 1 >> >> I guess the command is not correct. Could anyone help, please? >> I am aware that the group masks based on surface definitions are not >>fully accurate. >> Thank you, >> Enrico >> >> wb_command -label-to-volume-mapping >>Q1-Q6_RelatedValidation...dlabel.nii MNI152_T1_2mm_brain.nii.gz >>test.nii.gz > > >________________________________ >The materials in this message are private and may contain Protected >Healthcare Information or other information of a sensitive nature. If you >are not the intended recipient, be advised that any unauthorized use, >disclosure, copying or the taking of any action in reliance on the >contents of this information is strictly prohibited. If you have received >this email in error, please immediately notify the sender via telephone >or return mail. > ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
