You could take a look at this as well:
https://www.ncbi.nlm.nih.gov/pubmed/27655470/
https://github.com/alexlicohen/script-toolbox
https://youtu.be/bvqgg7ZFeI8

It won't give you MNI-space files and isn't intended for cross-subject
comparison, but the scripts could get you started converting from FS
files...

-Alex

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Alexander Li Cohen, M.D., Ph.D.
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