Dear HCP community, I have a problem with FreeSurfer surface reconstruction for one of my subjects. Surface reconstruction is ok for the most part, but some parts in the upper brain are bad. The surface extends outside the brain and into the skull, and misses parts of the GM.
How could I fix this? I guess I should stop the FreeSurferPipeline.sh at some point and correct FS intermediate output before continuing. I'm just not sure where I should break the processing and what I should do at this point? Here is an example of one of the defect I have to correct : [cid:[email protected]] Cheers, JF _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
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