The FSL MNI152 nonlinear template. Peace,
Matt. From: Dorian Pustina <[email protected]<mailto:[email protected]>> Date: Monday, December 5, 2016 at 1:45 PM To: Matt Glasser <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] Moving manual ROIs between subjects Great, thank you Mat. ApplyXFM did not work but `applywarp` worked fine. Looks like there are several MNI152 variants in the McGill website<http://nist.mni.mcgill.ca/?page_id=714> (the most recent being called "6th generation"). Is there a specific variabt used for the HCP piepline or just the plain old one that comes with SPM/FSL/etc? Dorian On Mon, Dec 5, 2016 at 12:43 PM, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: You should be able to draw these in standard space and use the --xfm and --invxfm with ${StudyFolder}/${Subject}/MNINonLinear/xfms/acpc_dc2standard.nii.gz and standard2acpc_dc.nii.gz which are FNIRT warp fields. Peace, Matt From: <[email protected]<mailto:[email protected]>> on behalf of Dorian Pustina <[email protected]<mailto:[email protected]>> Date: Monday, December 5, 2016 at 10:15 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] Moving manual ROIs between subjects Hi all, Thank you all for providing the data and supporting user's needs. I am using volumetric ROIs (.nii.gz) to extract a specific white matter tract from HCP. Given the nature of the tract I have to manually draw them, which worked pretty well on a single subject. However, this is not optimal for 900 subjects. Is there a way to use transform the ROIs from a template space (or a single subject's space) into the space of every HCP subject? I am hoping to achieve this with the existing transformation matrices, without needing to register each subject with volumetric software (i.e., ANTs). Any help is appreciated. Dorian _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
