Hi, Please check the PALM Wiki page examples again. They were just updated yesterday. In particular, if you are using PALM without any spatial statistics, you should be able to run directly using dscalar.nii files. You can concatenate the dscalars into a single file using wb_shortcuts -cifti-concatenate
cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected] On 12/13/16, 10:08 AM, "[email protected]<mailto:[email protected]> on behalf of Durgerian, Sally" <[email protected]<mailto:[email protected]> on behalf of [email protected]<mailto:[email protected]>> wrote: Hi HCP folks, I’m trying to use PALM to do a group analysis of files ending in MyelinMap.32k_fs_LR.dscalar.nii. I don’t know how to concatenate them into the file .dtseries that is needed for Example 10 in the PALM User Guide. What is the command I would use to concatenate all the individual subject files into a form that I could input into PALM? I’m assuming that if I get a .dtseries.nii file, I can use their recommendations for the rest: wb_command -cifti-separate $data.dtseries.nii COLUMN -volume-all ${data}_sub.nii \ -metric CORTEX_LEFT ${data}_L.func.gii -metric CORTEX_RIGHT ${data}_R.func.gii wb_command -gifti-convert BASE64_BINARY ${data}_L.func.gii ${data}_L.func.gii palm -i ${data}_L.func.gii -i ${data}_R.func.gii -i ${data}_sub.nii -d design.mat -t design.con …. Thanks for your help, Sally _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
