What is your study question? If necessary you can explain off list so that I can provide more useful advice.
Peace, Matt. On 12/19/16, 6:54 PM, "[email protected] on behalf of Sally Durgerian" <[email protected] on behalf of [email protected]> wrote: >Dear HCP experts, >I¹m groping around in the dark about how to concatenate various filetypes >of individual subject data in order to do a group analysis in PALM. >Most of the examples seem to assume that I already know how to do that. >Or maybe I¹m not understanding this at an even higher level. > >Here¹s what I¹m trying to do: >I have a group of subjects and a design matrix, and I want to use PALM to >do joint inference. I was thinking I should use the files in each >subject's MNINonLinear/fsaverage_LR32k/ directory, specifically: >L and R.MyelinMap.32k_fs_LR.dscalar.nii, >L and R.ArealDistortion_FS.32k_fs_LR.shape.gii and >L and R.corrThickness.32k_fs_LR.shape.gii > >I want to do TFCE, so I also need to use each subject¹s concatenated L >and R.midthickness.32k_fs_LR.surf.gii (right?), and also the mean area >files (L and R_area.func.gii) I created as shown in Example 10 of the >PALM examples. >I have somehow managed, probably in a really kludgey way, to get this >working without TFCE, but I can¹t figure out how to concatenate the >surface files properly, or even whether I¹m using the right files. > >Am I on the right track, and how do I concatenate the subject files for >each of these data types so that their matrices all get read in the >proper orientations? >I would appreciate it if you would give the example as an entire command, >rather than saying ³use cifti-concatenate², because I may be getting some >part of the syntax wrong. And also, please let me know if I have not >chosen the optimal group of input files for the task. >Thanks so much, >Sally > > >_______________________________________________ >HCP-Users mailing list >[email protected] >http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
