I think I cannot access this link https://wustl.box.com/s/uuxn06pjlnn6ts7nhak0zww53l33fxzf ; the following message appears: "This shared file or folder link has been removed or is unavailable to you. ". Is there an alternative way to access the information in this link?
As for this image (https://drive.google.com/file/d/0B76s53K6sr4Qa0Z6MHB3OXRxbW8/view?usp=sharing), wouldn't this show z values from 0 to 0.05 (instead of p values from 0 to 0.05) if the file I am using is the "tfMRI_ALLTASKS_level3_zstat1" file? I guess it is first necessary to convert z values to p values using the wb_command. Is this explained in the wustl.box link that you sent? Thank you, Xavier. ________________________________________ From: Dierker, Donna [do...@wustl.edu] Sent: Wednesday, December 28, 2016 10:11 AM To: Xavier Guell Paradis Subject: Re: [HCP-Users] Threshold p value in workbench view Does this link work? https://drive.google.com/file/d/0B76s53K6sr4Qa0Z6MHB3OXRxbW8/view?usp=sharing > On Dec 27, 2016, at 5:04 PM, Dierker, Donna <do...@wustl.edu> wrote: > > See if you can read this link, Xavier: > > https://wustl.box.com/s/uuxn06pjlnn6ts7nhak0zww53l33fxzf > > People also use metric- or cifti-math to convert to log p or 1-p. Whatever > works for you. > > >> On Dec 27, 2016, at 10:39 AM, Xavier Guell Paradis <xavie...@mit.edu> wrote: >> >> Dear Sir or Madam, >> When viewing task contrasts in workbench (the file is >> HCP_S900_787_tfMRI_ALLTASKS_level3_zstat1_hp200_s2_MSMSulc.dscalar.nii), is >> there a way to threshold areas of activation for a given p value (e.g. areas >> that, in the task contrast, have achieved a p<0.001)? >> A previous post in this mailing list asked the same question (the post was >> called "thresholding the data to p-value"), but the person that replied to >> the email included a screen capture which is not available in the mail >> archive. Without that screen capture, I cannot understand how to threshold >> data using p values. >> >> Thank you very much, >> Xavier. >> >> >> Xavier Guell Paradis, M.D. >> Visiting Scientist >> Massachusetts Institute of Technology >> McGovern Institute for Brain Research >> Office: 46-4033A >> Phone: (617) 324-4355 >> Email: xavie...@mit.edu >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > https://drive.google.com/file/d/0B76s53K6sr4Qa0Z6MHB3OXRxbW8/view?usp=sharingnot > the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
