That is because it is now the default. Peace,
Matt. From: Antonin Skoch <[email protected]<mailto:[email protected]>> Date: Saturday, January 7, 2017 at 8:19 PM To: Matt Glasser <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] Change of behavior of -first_wm_peak of mris_make_surfaces in recent versions of FreeSurfer V6beta Dear Matt, thank you for the feedback. The setup of V6 dev version is pain, but I think I need it since I run full-hires reconstruction (using -cm) due to subsequent hippocampal subfields segmentation. In the meantime I found that for new version of mris_make_surfaces when not using -first_wm_peak option I am getting results similar to previous version with -first_wm_peak. Regards, Antonin From: "Glasser, Matthew" <[email protected]<mailto:[email protected]>> To: Antonin Skoch <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Sent: 1/8/2017 1:16 AM Subject: Re: [HCP-Users] Change of behavior of -first_wm_peak of mris_make_surfaces in recent versions of FreeSurfer V6beta At this time we are still getting better results with FreeSurfer V5.3. Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Antonin Skoch <[email protected]<mailto:[email protected]>> Date: Saturday, January 7, 2017 at 7:13 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] Change of behavior of -first_wm_peak of mris_make_surfaces in recent versions of FreeSurfer V6beta Dear experts, while testing my modified HCP pipeline with V6beta version of FreeSurfer, I noticed the change of behaviour of -first_wm_peak option of mris_make_surfaces with recent development version of FreeSurfer (after 20th December 2016). There has been change to looking of peak in 2nd derivative (probably, previously there was search for peak in 1st derivative). The result is that the white surfaces are getting much internally than before, to me the result looks less anatomically correct (see the screenshot, yellow is white surface before upgrade to recent version, red is white surface after the upgrade). Could you please comment on? What is ever the significance of using this option in FreeSurferHiResWhite.sh? Regards, Antonin Skoch _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
