The FieldTrip CIFTI package is not supported for MRI data at this time. Please post the exact wb_commands you used following Tim’s instructions.
Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of "Shearrer, Grace" <[email protected]<mailto:[email protected]>> Date: Wednesday, January 25, 2017 at 4:08 PM To: Timothy Coalson <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] merging/combining .dlabel from cortical and subcortical sources Hi Tim, thank you. I have created a .dlabel file with subcortical structures with your advice (I think). When I load the .dlabel file into matlab it shows all the structures that I expect. However, when I load it into wb view to view parcellations the subcortical parcellations do not appear. In the wb view Identify Brainordinate the subcortical also appear. How do I know if my parcellations exist? As always thank you, Grace PS I attached photos to better illustrate my point Grace Shearrer, PhD Post Doctoral Researcher Neuropsychology of Ingestive Behavior Lab University of North Carolina Chapel Hill ________________________________ From: Timothy Coalson <[email protected]<mailto:[email protected]>> Sent: Tuesday, January 17, 2017 8:51 PM To: Shearrer, Grace Cc: [email protected]<mailto:[email protected]> Subject: Re: [HCP-Users] merging/combining .dlabel from cortical and subcortical sources The easiest way to do this is probably to use -cifti-separate with -volume-all on the gordon dlabel file, then use that volume file and the MMP dlabel file in -cifti-create-dense-from-template. Tim On Mon, Jan 16, 2017 at 12:57 PM, Shearrer, Grace <[email protected]<mailto:[email protected]>> wrote: Hi Tim, I have a question building off of this thread (https://www.mail-archive.com/[email protected]/msg03218.html). I also am trying to create a cortical+subcortical dlabel file. Ideally I want to combine the Q1-Q6_RelatedValidation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii and the Gordon333_FreesurferSubcortical.32k_fs_LR.dlabel.nii. However in the Gordon333 I want to exclude the CORTEX_LEFT and the CORTEX_RIGHT (since these are already covered in the Q1-Q6 file. I think I would use the wb_command -cifti-create-dense-from-template However, I am kind of lost at how to choose the labels from the Gordon333 atlas. Any guidance would be appreciated, Grace Grace Shearrer, PhD Post Doctoral Researcher Neuropsychology of Ingestive Behavior Lab University of North Carolina Chapel Hill _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
