Hi Todd, We processed blood and saliva samples from HCP subjects for GWAS using the Illumina Mega Chip (has 2M multiethnic SNPs), plus three specialized Illumina chips to look for single nucleotide polymorphisms particularly relevant to neuroimaging studies: Psych chip, NeuroX chip, and Immunochip. We were not able to do whole exome or whole genome due to budgetary constraints.
Again, the analyzed genetic data should be available on dbGaP sometime in March. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> [email protected]<mailto:[email protected]> www.humanconnectome.org<http://www.humanconnectome.org/> ________________________________ From: [email protected] <[email protected]> on behalf of Preuss, Todd M <[email protected]> Sent: Thursday, February 2, 2017 1:17:48 PM To: [email protected] Subject: [HCP-Users] How have the genetic data for HCP been collected? I’m trying to determine the technique used to collect genetic data for HCP. Whole-genome? Whole-exome? Thanks, Todd -- Todd M. Preuss, Ph.D. Associate Research Professor, Division of Neuropharmacology and Neurologic Diseases & Center for Translational Social Neuroscience Yerkes National Primate Research Center Emory University Associate Professor, Department of Pathology and Laboratory Medicine Emory University School of Medicine Faculty Affiliate, Department of Anthropology, Department of Psychology, and Program in Neuroscience and Behavioral Biology Emory University Mailing address Todd M. Preuss, Ph.D. Yerkes National Primate Research Center Emory University 954 Gatewood Rd. Atlanta, GA 30329 USA 404-712-8159 (office) 404-727-1331 (lab) 404-727-1266 (fax) [email protected] https://preusslab.yerkes.emory.edu/ ________________________________ This e-mail message (including any attachments) is for the sole use of the intended recipient(s) and may contain confidential and privileged information. If the reader of this message is not the intended recipient, you are hereby notified that any dissemination, distribution or copying of this message (including any attachments) is strictly prohibited. If you have received this message in error, please contact the sender by reply e-mail message and destroy all copies of the original message (including attachments). _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
