I can see that several changes/additions have been made to 3.21, but I asked whether there is a difference in *just* the minimal preprocessing pipelines (i.e. PreFreeSurfer, FreeSurfer, PostFreeSurfer, fMRIVolume, fMRISurface, and Diffusion) between 3.4.0 and 3.21.
I can ask this a different way, do MSMAll, DeDriftAndResample, PostFix, RestingStateStats, ICAFIX, and TaskfMRIAnalysis scripts rely specifically on data preprocessed from a particular version? My impression was that perhaps MSMAll, DeDriftAndResample, PostFix, RestingStateStats, ICAFIX, and TaskfMRIAnalysis act on top of minimally preprocessed data. Is this wrong? -Tim Timothy Hendrickson Department of Psychiatry University of Minnesota Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) On Tue, Feb 21, 2017 at 10:59 AM, Harms, Michael <mha...@wustl.edu> wrote: > > There have been a lot of changes/additions from 3.4.0 to 3.21. If you are > starting a new study, it would be preferable for you to start with the > latest version. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 <(314)%20747-6173> > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Timothy > Hendrickson <hendr...@umn.edu> > Date: Tuesday, February 21, 2017 at 9:38 AM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] Variation in HCP Minimal Preprocessing Pipeline > Differences Across Releases > > Hello, > > I have been using version 3.4.0 of the HCP Minimal Preprocessing Pipeline > to process my HCP compatible data. > I've used 3.4.0 to run the structural (PreFreeSurfer, FreeSurfer, > PostFreeSurfer), fMRI (fMRIVolume, and fMRISurface), and diffusion > sub-pipelines. I have now downloaded version 3.21 and notice several > additional sub-pipelines such as MSMAll, DeDriftAndResample, PostFix, > RestingStateStats, ICAFIX, and TaskfMRIAnalysis to name a few. I am curious > whether I can use minimally preprocessed data from 3.4.0 and shoehorn it > into the additional sub-pipelines just mentioned. > > I am hoping I can get away with not reprocessing all of my data through > the minimal preprocessing! > > Thank you! > > -Tim > > > Timothy Hendrickson > Department of Psychiatry > University of Minnesota > Office: 612-624-6441 <(612)%20624-6441> > Mobile: 507-259-3434 <(507)%20259-3434> (texts okay) > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
