FreeSurfer failed to complete successfully. Peace,
Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Dev vasu <[email protected]<mailto:[email protected]>> Date: Thursday, February 23, 2017 at 3:14 PM To: "<[email protected]<mailto:[email protected]>>" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] Freesurfer Non linear registration Dear all, When i tried to run Freesurfer Pipeline i am facing an error where the pipeline could not generate brain.finalsurfs.mgz . Could you please let me know the reason for this error?. START: FS2CaretConvertRegisterNonlinear FreeSurfer2CaretConvertAndRegisterNonLinear.sh: RegName: MSMSulc mghRead(/media/vasudev/vkirsch4/Project_BLVP/HCP_Proj/KON2/T1w/KON2/mri/brain.finalsurfs.mgz, -1): could not open file mghRead(/media/vasudev/vkirsch4/Project_BLVP/HCP_Proj/KON2/T1w/KON2/mri/brain.finalsurfs.mgz, -1): could not open file mghRead(/media/vasudev/vkirsch4/Project_BLVP/HCP_Proj/KON2/T1w/KON2/mri/brain.finalsurfs.mgz, -1): could not open file Cannot open volume /media/vasudev/vkirsch4/Project_BLVP/HCP_Proj/KON2/T1w/wmparc_1mm for reading! Thanks Vasudev _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
