Dear HCP Experts, We recently installed the HCP CCF Life Span Pilot pulse sequences on our Prisma 3T scanner at U of Utah. We successfully acquired the images and pre-processed the data according to the HCP Minimal Preprocessing Pipeline (PreFreeSurfer, FreeSurfer, PostFreeSurfer, DiffusionPreprocessing, GenericfMRIVolumeProcessing, and GenericfMRISurfaceProcessing pipelines). The processed folders are generated according to the HCP documentation folder structures. We can open the structural data (labels, myelin maps, etc) in wb_view and they look beautiful.
Now we want to apply ICA-FIX according to the HCP modifications, and we are not sure where to start. There are ICAFIX, ReApplyFix, and RestingStateAnalysis folders with the downloaded pipelines. Would you point me to a procedure or share a batch that takes the results from the pre-processed data to the level we can open functional connectivity cleaned maps with wb_view? Thank you. Osama Osama Abdullah, PhD Department of Neurology School of Medicine University of Utah 36 S. Wasatch Drive Salt Lake City, UT 84112 Phone: (801) 587-8357 _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
