HCPers:

I am trying to understand, in detail, all the HCP pipeline transformations and 
what order they are applied to all files. Besides the paper, are there any more 
detailed references, diagrams, flowcharts, etc. describing the transformations? 
My intent to is be able to interrupt the pipeline at any point and modify it 
for my own purposes or grab files at particular stages to import into my own 
Matlab processing for EEG source imaging. I am particularly interested in which 
transforms are linear (6 parameter affine) vs. non-linear/warping.

-Jeff Eriksen
OHSU


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