Dear Matthew,
I have done it myselves, thanks for your response. Thanks Vasudev On 31 March 2017 at 22:55, Glasser, Matthew <[email protected]> wrote: > Yes, the documentation of wb_command -volume-label-import tells you > exactly how to do that. I would recommend consulting the documentation > first and e-mail the list second if something in the documentation doesn’t > make sense. > > Peace, > > Matt, > > From: Dev vasu <[email protected]> > Date: Friday, March 31, 2017 at 8:42 AM > To: Matt Glasser <[email protected]> > Cc: Timothy Coalson <[email protected]>, "<[email protected]>" < > [email protected]> > > Subject: Re: [HCP-Users] wb_view : Unable to load labels through features > tab > > Dear Sir, > > is there any way that i can suggest the colors for each subfield, instead > of some random colors ? > > Thanks > Vasudev > > On 31 March 2017 at 03:05, Glasser, Matthew <[email protected]> wrote: > >> Then do as Tim suggests. >> >> Matt. >> >> From: <[email protected]> on behalf of Dev vasu < >> [email protected]> >> Date: Thursday, March 30, 2017 at 7:59 PM >> To: Timothy Coalson <[email protected]> >> Cc: "<[email protected]>" <[email protected]> >> Subject: Re: [HCP-Users] wb_view : Unable to load labels through >> features tab >> >> Dear Sir, >> >> Each label consists of several hippocampus subfield already marked with >> different integers as stated here https://github.com/CobraLab/at >> lases/tree/master/hippocampus-subfields. >> >> >> I am interested in visualizing each of the sub field in the label with >> marked integers values. >> >> Thanks >> Vasudev >> >> On 31 March 2017 at 00:31, Timothy Coalson <[email protected]> wrote: >> >>> It looks like that method outputs each label as a separate file, which >>> is important information for understanding what your question is. I >>> suggest combining them into one file with different integers for each >>> label. >>> >>> One way to do this is to use -volume-merge to turn the labels into a >>> multi-frame volume file, then use -volume-reduce INDEXMAX and MAX to >>> generate the file of integers, and a file you can mask out unlabeled areas >>> with (using -volume-math). Then use -volume-label-import to give them >>> names and colors. >>> >>> Tim >>> >>> >>> On Thu, Mar 30, 2017 at 5:03 PM, Dev vasu <vasudevamurthy.devulapally@gm >>> ail.com> wrote: >>> >>>> Dear Sir, >>>> >>>> >>>> I am not experiencing any problem but i am unable to see different >>>> colour maps in label files ( in .nii format ) , The labels are Hippocampus >>>> subfields which i have segmented using https://github.com/CobraLab/an >>>> tsRegistration-MAGeT . >>>> >>>> >>>> Thanks >>>> Vasudev >>>> >>>> On 30 March 2017 at 22:46, Timothy Coalson <[email protected]> wrote: >>>> >>>>> That isn't what -label-to-volume-mapping does, it requires a *surface* >>>>> label file (gifti) as input. >>>>> >>>>> wb_view should be able to load most nifti volume files, and it isn't >>>>> clear what kind of problem you are having (is there an error message? >>>>> does >>>>> it show up in the save/manage files dialog?). What created the file? >>>>> >>>>> If you just have a volume file with integers in it, you can load it >>>>> as-is, but similar integers will get similar colors, which may not be >>>>> desired. You can use -volume-label-import on such a volume file to create >>>>> a workbench-format nifti label volume that allows you to set each label's >>>>> color and name independently. >>>>> >>>>> Tim >>>>> >>>>> >>>>> On Thu, Mar 30, 2017 at 1:53 PM, Dev vasu < >>>>> [email protected]> wrote: >>>>> >>>>>> Dear all, >>>>>> >>>>>> I have label files in nifti format and i am unable to visualize color >>>>>> bars and associated labels , should i refine the labels using >>>>>> *-label-to-volume-mapping >>>>>> *and is there any mandatory naming convention and format ( NIFITI >>>>>> or GIFTI ) for Connectome workbench to recognize the labels ?. >>>>>> >>>>>> >>>>>> >>>>>> Thanks >>>>>> Vasudev >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> HCP-Users mailing list >>>>>> [email protected] >>>>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>>>>> >>>>> >>>>> >>>> >>> >> _______________________________________________ >> HCP-Users mailing list >> [email protected] >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> ------------------------------ >> >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. 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