Dear professors,
I tried to run the
Pipelines-3.4.0/Examples/Scripts/GenericfMRIVolumeProcessingPipelineBatch.mine.sh
(I modified based on HCP course practicals), and I got an error when
Pipelines-3.4.0/fMRIVolume/scripts/DistortionCorrectionAndEPIToT1wReg_FLIRTBBRAndFreeSurferBBRbased.sh
was running, it said cannot find 100307/T1w/100307/mri/transforms/eye.dat, and
actually my data folder has no "100307/T1w/100307" or any file named "eye.dat".
The data I used is HCP Course data.
Here follows the ERROR info:
##############################################################################################
Running FAST segmentation
FLIRT pre-alignment
Running BBR
0.235096 0.999965 -0.007114 -0.004424 0.000000 0.007161 0.999919 0.010569
0.000000 0.004348 -0.010601 0.999934 0.000000 -1.306487 2.209648 1.469996
1.000000
ERROR: cannot find
/home/chenxiayu/Workingdir/Data/HcpData/100307/T1w/100307/mri/transforms/eye.dat
set -- --path=/home/chenxiayu/Workingdir/Data/HcpData --subject=100307
--fmriname=tfMRI_EMOTION_LR
--fmritcs=/home/chenxiayu/Workingdir/Data/HcpData/100307/unprocessed/3T/tfMRI_EMOTION_LR/100307_3T_tfMRI_EMOTION_LR.nii.gz
--fmriscout=/home/chenxiayu/Workingdir/Data/HcpData/100307/unprocessed/3T/tfMRI_EMOTION_LR/100307_3T_tfMRI_EMOTION_LR_SBRef.nii.gz
--SEPhaseNeg=/home/chenxiayu/Workingdir/Data/HcpData/100307/unprocessed/3T/tfMRI_EMOTION_LR/100307_3T_SpinEchoFieldMap_LR.nii.gz
--SEPhasePos=/home/chenxiayu/Workingdir/Data/HcpData/100307/unprocessed/3T/tfMRI_EMOTION_LR/100307_3T_SpinEchoFieldMap_RL.nii.gz
--fmapmag=NONE --fmapphase=NONE --echospacing=0.00058
--echodiff=NONE --unwarpdir=x- --fmrires=2 --dcmethod=TOPUP
--gdcoeffs=NONE
--topupconfig=/home/chenxiayu/Workingdir/Pipelines-3.4.0/global/config/b02b0.cnf
--printcom=
##############################################################################################
I wonder why I got this and how to fix it.
Thanks in advance,
Bai Haohao
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