I don't believe the CREST resources documented on the wiki page have been generated yet for the 1200 release, however the data can be accessed from the session data by iterating over the session data and pipeline output resources. We'll hopefully have the CREST resources generated soon. Something like the following should get the results:
read -s -p "ENTER PASSWORD: " PW;JSESSIONID=`curl -s -k -u USERNAME:$PW https://db.humanconnectome.org/data/JSESSIONID`;export JSESSIONID;echo $JSESSIONID for CSVROW in $(curl -s -k --cookie JSESSIONID=$JSESSIONID https://db.humanconnectome.org/data/experiments?xsiType=xnat:mrSessionData\&project=HCP_1200\&columns=ID,label,URI\&format=csv | grep "experiments"); do LABEL=$(echo $CSVROW | cut -d, -f3) EXP=$(echo $CSVROW | cut -d, -f4) echo "EXPERIMENT=$LABEL" for RESOURCE in $(curl -s -k --cookie JSESSIONID=$JSESSIONID https://db.humanconnectome.org${EXP}/resources?columns=xnat_abstractresource_id,label\&format=csv | grep "MRI.*preproc" | cut -d, -f2); do SUBDIR=$(echo "$RESOURCE" | sed -e "s/_preproc//") echo "$RESOURCE" curl -s -k --cookie JSESSIONID=$JSESSIONID https://db.humanconnectome.org${EXP}/resources/${RESOURCE}/files/${SUBDIR}/Movement_RelativeRMS_mean.txt curl -s -k --cookie JSESSIONID=$JSESSIONID https://db.humanconnectome.org${EXP}/resources/${RESOURCE}/files/${SUBDIR}/Movement_AbsoluteRMS_mean.txt done done Regards, Mike -----Original Message----- From: hcp-users-boun...@humanconnectome.org [mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of Harms, Michael Sent: Friday, April 21, 2017 11:12 AM To: Ge, Tian <t...@partners.org>; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] motion parameters Hi, You can either wait for the data to appear on Amazon S3, or access those specific files via REST calls into the database. For the latter see here https://wiki.humanconnectome.org/display/PublicData/How+To+Access+Subject+D ata+via+REST and you can also find other examples if you search the HCP User list archives. cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave.Tel: 314-747-6173 St. Louis, MO 63110Email: mha...@wustl.edu On 4/20/17, 8:34 PM, "hcp-users-boun...@humanconnectome.org on behalf of Ge, Tian" <hcp-users-boun...@humanconnectome.org on behalf of t...@partners.org> wrote: Hi HCP experts, Is there a way to quickly get the motion parameters (specifically, Movement_AbsoluteRMS_mean.txt and Movement_RelativeRMS_mean.txt) for each run of the S1200 new subjects without downloading the full rs-fMRI package? Thanks! best, -Tian The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
