I’m not sure if that is a great idea as one run is RL and the other LR and I don’t think they were really intended to be used that way from a task design perspective either. Perhaps instead you could make use of the test-retest dataset which has 45 subjects completely rescanned through the protocol?
Peace, Matt. From: Jiang Jian <[email protected]<mailto:[email protected]>> Date: Wednesday, May 24, 2017 at 8:34 PM To: Matt Glasser <[email protected]<mailto:[email protected]>> Cc: "Harms, Michael" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re:Re: [HCP-Users] run-level (level 1） functional MRI data Hi, I mean run level by saying level 1 and I want it because we are considering using one run for analysis and other run for validation. Maybe we should generate level 1 processed data using your scripts if we really need it. Thanks!! Jiang Jian At 2017-05-24 23:50:20, "Glasser, Matthew" <[email protected]<mailto:[email protected]>> wrote: By level 1 do you mean subject wise? Peace, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Jiang Jian <[email protected]<mailto:[email protected]>> Date: Tuesday, May 23, 2017 at 9:11 PM To: "Harms, Michael" <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] run-level (level 1） functional MRI data Hi Michael, I am sorry I didn't put it clearly. I want "level 1 " results processed through the task model (GLM)? Are they in file ${subj}/MNINonLinear/Results/${fMRIName}_{LR,RL}/${fMRIName}_{LR,RL}__{L,R}.native.func.gii? Thanks, Jiang Jian At 2017-05-23 22:31:34, "Harms, Michael" <[email protected]<mailto:[email protected]>> wrote: Hi, Do you want the “Level 1” results processed through the task model (GLM)? Or, do you just want the “minimally preprocessed” data that entered into the task analysis scripts? These are available in: ${subj}/MNINonLinear/Results/${fMRIName}_{LR,RL}/${fMRIName}_{LR,RL}_Atlas_MSMAll.dtseries.nii for the “MSMAll” registered version. cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: [email protected]<mailto:[email protected]> From: <[email protected]<mailto:[email protected]>> on behalf of Jiang Jian <[email protected]<mailto:[email protected]>> Date: Monday, May 22, 2017 at 9:26 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] run-level (level 1） functional MRI data Dear Professors, I want to use run-level data to do some analysis, and I wonder would file named *.native.fun.gii (e.g., tfMRI_WM_LR.L.natiive.func.gii) contains run-level functional data? Best, Jiang Jian --------------------------------- Graduate Student Beijing Normal University, 100875 _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
