Thanks for your reply, Matt, and I'll remember that for next time. I just need to play around with the wb_command.
Thanks, Ian Ian A. Kennedy, M.S. Imaging Scientist I Avid Radiopharmaceuticals 3711 Market Street, 7th Floor Philadelphia, PA 19104 Phone: 215-798-6091 Email: [email protected]<mailto:[email protected]> CONFIDENTIALITY NOTICE: This email message from Avid Radiopharmaceuticals, a wholly-owned subsidiary of Eli Lilly and Company, (including all attachments) is for the sole use of the intended recipient(s) and may contain confidential information. Any unauthorized review, use, disclosure, alteration or distribution is strictly prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message. From: Glasser, Matthew [mailto:[email protected]] Sent: Thursday, June 08, 2017 1:45 PM To: [email protected]; Ian Kennedy <[email protected]> Subject: Re: [HCP-Info] [Contact Form]: Transforming Group MPM Parcellations to fsaverage The parcellation file is available here: https://balsa.wustl.edu/file/show/3VLx<https://urldefense.proofpoint.com/v2/url?u=https-3A__balsa.wustl.edu_file_show_3VLx&d=DQMFAg&c=euGZstcaTDllvimEN8b7jXrwqOf-v5A_CdpgnVfiiMM&r=uUqKSf0EefkVyGkrDcMEqp5FzcUOYbkkyxNsGzAnDc0&m=OWldEndEDJFepZNLXcj3WtG4-pZKa1S3ejgUlJu4jDs&s=EnZsjNjSYcHu0kjjuZvOVlWpjVRAunKCg_PdM2LDVv4&e=> Note that the preferred venue for asking questions about HCP data is the HCP-Users mailing list so that all list members have the benefit of the answer. Peace, Matt. ________________________________ From: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> on behalf of [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> Sent: Thursday, June 8, 2017 12:36 PM To: [email protected]<mailto:[email protected]> Subject: [HCP-Info] [Contact Form]: Transforming Group MPM Parcellations to fsaverage Name: Ian Kennedy Email: [email protected]<mailto:[email protected]> Institution: Avid Radiopharmaceuticals Area of Scientific Interest: Relationships between PET/volumetrics, Alzheimer's Disease Subject: [Contact Form]: Transforming Group MPM Parcellations to fsaverage Comments: Good Afternoon, I'm interested in exploring tau and amyloid PET concentrations within the group MPM parcellations from the Glasser et al publication from 2016, but I was hoping I could project the labels onto FreeSurfer's fsaverage standard template for use as VOIs. I located the document "hcp-users FAQ #9: How do I map data between FreeSurfer and HCP?" and have a good idea how to go about transforming the parcellations, but I'm unable to locate the correct file with the parcellations. I downloaded the Group MPM Parcellations scene file, but there doesn't appear to be hemisphere-specific parcellations that I could use when I follow along with the FAQ. Are these files located elsewhere, or is it easy for me to extract them from the scene file myself? I'm new to the HCP pipelines and may just be missing something. Best, Ian _______________________________________________ Info mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/info<https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.humanconnectome.org_mailman_listinfo_info&d=DQMFAg&c=euGZstcaTDllvimEN8b7jXrwqOf-v5A_CdpgnVfiiMM&r=uUqKSf0EefkVyGkrDcMEqp5FzcUOYbkkyxNsGzAnDc0&m=OWldEndEDJFepZNLXcj3WtG4-pZKa1S3ejgUlJu4jDs&s=1sYlrrgg4BkEWRwKVtU34nSTJLFU8Lm4d2KaH8NdxsE&e=> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
