This also needs to be set to NONE:
AvgrdcSTRING=“SiemensFieldMap" Matt. From: <sar.rafi...@gmail.com<mailto:sar.rafi...@gmail.com>> on behalf of Sara Rafique <srafi...@yorku.ca<mailto:srafi...@yorku.ca>> Date: Wednesday, July 12, 2017 at 4:13 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] PreFreeSurfer: Cannot open volume None for reading! Hi Matt, Please see attached. I also attached the log that is generated, in case this helps. Many thanks, Sara On 10 July 2017 at 22:12, Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote: Can you post the code you are using the launch the pipeline? Thanks, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Sara Rafique <srafi...@yorku.ca<mailto:srafi...@yorku.ca>> Date: Sunday, July 9, 2017 at 7:44 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] PreFreeSurfer: Cannot open volume None for reading! Hi HCP team, I'm attempting to run the PreFreeSurfer.sh script, but I get the following error: About to use fsl_sub to queue or run /Applications/HCP_Pipelines/PreFreeSurfer/PreFreeSurferPipeline.sh Cannot open volume None for reading! Is this error related to the variables I have set to "NONE" as indicated by the script? These being: MagnitudeInputName PhaseInputName SpinEchoPhaseEncodeNegative SpinEchoPhaseEncodePositive DwellTime SEUnwarpDir TopupConfig GEB0InputName T1wSampleSpacing T2wSampleSpacing UnwarpDir GradientDistortionCoeffs Many thanks, Sara _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
