How did you call the pipeline?
Peace,
Matt.
On 8/22/17, 10:57 AM, "hcp-users-boun...@humanconnectome.org on behalf of
Kim, Sang-Young" <hcp-users-boun...@humanconnectome.org on behalf of
sak...@pitt.edu> wrote:
>Dear HCP experts:
>
>We have diffusion MRI data acquired from Siemens Prisma 3 T scanner. The
>dMRI data were acquired with 113 diffusion direction and AP phase
>encoding. The b0 images were acquired with opposite phase encoding
>direction for topup. I would like to preprocess dMRI data using
>DiffusionPreprocessing pipeline provided from HCP. So I ran the
>DiffusionPreprocessingBatch.sh file with minor modification for scan
>setting and gradient nonlinearity correction.
>
>But error message came up while running "run_eddy.sh". Please see below:
>****************************************************************
>dyld: Library not loaded: @rpath/libcudart.7.5.dylib
> Referenced from: /usr/local/fsl/bin/eddy_cuda
> Reason: image not found
>/Users/sang-young/projects/Pipelines/DiffusionPreprocessing/scripts/run_ed
>dy.sh: line 380: 16731 Abort trap: 6 ${eddy_command}
>******************************************************************
>
>Does anybody have similar problem? Any insights would be greatly
>appreciated.
>
>Thanks in advance.
>
>Sang-Young Kim, Ph.D.
>
>Postdoctoral Research Fellow
>Department of Radiology, University of Pittsburgh
>
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