I worked on several higher-level tools as well at the recent NeuroHackWeek (based partly on Dr. Cottaar’s tools). I’m working with the NiBabel and NiWidgets groups to get some of these incorporated into future releases, but for now the provisional scripts are available at https://github.com/neurohackweek/NHW_visualization/blob/master/ciftitools.py . The parent github also has some jupyter notebooks with (fairly unpolished) examples using HCP data.
Current functions: cread: simplified loading of cifti files csave: simplified saving of cifti files clthresh: zero data below threshold cuthresh: zero data above threshold cmask: mask one cifti file with nonzero values from a second cifti file cinfo: print useful cifti header metadata cvoxels: return array of subcortical voxel coordinates csplit: split cifti file into two gifti and one nifti file for e.g. Display If you wind up using these, please let me know any feedback! Happy to help if you have questions. -Ely _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
