Dear experts, I want to use the “hcp_fix" script for clean up of resting state data after HCP pipelines. I am editing “settings.sh" and wanted to know if I have to edit these lines copied below:
# Settings file for FIX # Modify these settings based on your system setup FIXVERSION=1.065 # (actually this version is 1.065 - see wiki page for details) # Get the OS and CPU type FSL_FIX_OS=`uname -s` FSL_FIX_ARCH=`uname -m` if [ -z "${FSL_FIXDIR}" ]; then FSL_FIXDIR=$( cd $(dirname $0) ; pwd) export FSL_FIXDIR fi Thank you very much, Leah > On Oct 30, 2017, at 10:29 AM, Marta Moreno <mmorenoort...@icloud.com> wrote: > > Great. Thank you very much. > >> On Oct 29, 2017, at 4:44 PM, Glasser, Matthew <glass...@wustl.edu >> <mailto:glass...@wustl.edu>> wrote: >> >> Yes that is what we do. >> >> Peace, >> >> Matt. >> >> From: Marta Moreno <mmorenoort...@icloud.com >> <mailto:mmorenoort...@icloud.com>> >> Date: Sunday, October 29, 2017 at 12:03 PM >> To: Matt Glasser <glass...@wustl.edu <mailto:glass...@wustl.edu>> >> Cc: HCP Users <hcp-users@humanconnectome.org >> <mailto:hcp-users@humanconnectome.org>> >> Subject: Re: [HCP-Users] ICA+FIX cleanup scripts >> >> Thanks for your answer. I just want to use the “hcp_fix" script for clean up >> of resting state data after HCP pipelines. I only need to know if I just >> need to run the “hcp_fix" on data already preprocessed with HCP pipelines, >> after which I get my clean dtseries.nii ready for FC analyses. >> >> Much appreciation. >> >> >> <Signature.png> >> >>> On Oct 29, 2017, at 11:41 AM, Glasser, Matthew <glass...@wustl.edu >>> <mailto:glass...@wustl.edu>> wrote: >>> >>> I think there is a readme with instructions on set up. If you have >>> specific questions about those, ICA+FIX questions might be best asked on >>> the FSL list, as the FSL programmers don’t watch this list. Here we can >>> answer questions about CIFTI or approaching clean up of resting state data. >>> >>> Peace, >>> >>> Matt. >>> >>> From: <hcp-users-boun...@humanconnectome.org >>> <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Marta Moreno >>> <mmorenoort...@icloud.com <mailto:mmorenoort...@icloud.com>> >>> Date: Sunday, October 29, 2017 at 9:11 AM >>> To: HCP Users <hcp-users@humanconnectome.org >>> <mailto:hcp-users@humanconnectome.org>> >>> Subject: [HCP-Users] ICA+FIX cleanup scripts >>> >>> Dear experts, >>> >>> I would like to use ICA+FIX cleanup after HCP minimal preprocessing >>> pipelines on high quality resting-state data acquired with a GE scanner. >>> HCP minimal preprocessing is working fine and installed locally. I have >>> downloaded now the tar file with ICA+FIX cleanup scripts. Could you please >>> give me some guidelines on what are the steps to follow to have them >>> running? I am using a MacPro. >>> >>> Much appreciation for your help. >>> >>> <Signature.png> >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org> >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users><Signature.png> >> >> <Signature.png> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users