Dear experts,
I want to use the “hcp_fix" script for clean up of resting state data after HCP
pipelines. I am editing “settings.sh" and wanted to know if I have to edit
these lines copied below:
# Settings file for FIX
# Modify these settings based on your system setup
FIXVERSION=1.065
# (actually this version is 1.065 - see wiki page for details)
# Get the OS and CPU type
FSL_FIX_OS=`uname -s`
FSL_FIX_ARCH=`uname -m`
if [ -z "${FSL_FIXDIR}" ]; then
FSL_FIXDIR=$( cd $(dirname $0) ; pwd)
export FSL_FIXDIR
fi
Thank you very much,
Leah
> On Oct 30, 2017, at 10:29 AM, Marta Moreno <[email protected]> wrote:
>
> Great. Thank you very much.
>
>> On Oct 29, 2017, at 4:44 PM, Glasser, Matthew <[email protected]
>> <mailto:[email protected]>> wrote:
>>
>> Yes that is what we do.
>>
>> Peace,
>>
>> Matt.
>>
>> From: Marta Moreno <[email protected]
>> <mailto:[email protected]>>
>> Date: Sunday, October 29, 2017 at 12:03 PM
>> To: Matt Glasser <[email protected] <mailto:[email protected]>>
>> Cc: HCP Users <[email protected]
>> <mailto:[email protected]>>
>> Subject: Re: [HCP-Users] ICA+FIX cleanup scripts
>>
>> Thanks for your answer. I just want to use the “hcp_fix" script for clean up
>> of resting state data after HCP pipelines. I only need to know if I just
>> need to run the “hcp_fix" on data already preprocessed with HCP pipelines,
>> after which I get my clean dtseries.nii ready for FC analyses.
>>
>> Much appreciation.
>>
>>
>> <Signature.png>
>>
>>> On Oct 29, 2017, at 11:41 AM, Glasser, Matthew <[email protected]
>>> <mailto:[email protected]>> wrote:
>>>
>>> I think there is a readme with instructions on set up. If you have
>>> specific questions about those, ICA+FIX questions might be best asked on
>>> the FSL list, as the FSL programmers don’t watch this list. Here we can
>>> answer questions about CIFTI or approaching clean up of resting state data.
>>>
>>> Peace,
>>>
>>> Matt.
>>>
>>> From: <[email protected]
>>> <mailto:[email protected]>> on behalf of Marta Moreno
>>> <[email protected] <mailto:[email protected]>>
>>> Date: Sunday, October 29, 2017 at 9:11 AM
>>> To: HCP Users <[email protected]
>>> <mailto:[email protected]>>
>>> Subject: [HCP-Users] ICA+FIX cleanup scripts
>>>
>>> Dear experts,
>>>
>>> I would like to use ICA+FIX cleanup after HCP minimal preprocessing
>>> pipelines on high quality resting-state data acquired with a GE scanner.
>>> HCP minimal preprocessing is working fine and installed locally. I have
>>> downloaded now the tar file with ICA+FIX cleanup scripts. Could you please
>>> give me some guidelines on what are the steps to follow to have them
>>> running? I am using a MacPro.
>>>
>>> Much appreciation for your help.
>>>
>>> <Signature.png>
>>>
>>> _______________________________________________
>>> HCP-Users mailing list
>>> [email protected] <mailto:[email protected]>
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users><Signature.png>
>>
>> <Signature.png>
>
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