Thank you both - I've manage to run it to the end following your advice Best wishes ________________________________ From: Glasser, Matthew [[email protected]] Sent: 03 November 2017 00:21 To: Mara Cercignani; [email protected] Subject: Re: [HCP-Users] problem with FreeSurfer2CaretConvertAndRegisterNonlinear
If you search the list you will see a response to this. We hope to get out a new official version of Connectome Workbench soon so that folks won’t run into this, but you can either install a development version or comment out that line for now/ Peace, Matt. From: <[email protected]<redir.aspx?REF=8kbw_dnfLwGe6tP-QW0e9rXZYhFp5QWmNOcesz-Qyizso4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzLWJvdW5jZXNAaHVtYW5jb25uZWN0b21lLm9yZw..>> on behalf of Mara Cercignani <[email protected]<redir.aspx?REF=p97adrGrQKK30u2l7HMP9Ujut1hskxqt0oZBa75rffvso4vpiSLVCAFtYWlsdG86TS5DZXJjaWduYW5pQGJzbXMuYWMudWs.>> Date: Thursday, November 2, 2017 at 4:45 AM To: "[email protected]<redir.aspx?REF=jshk1TenYW2_OFAVmgA3FXeBzh8uJv8IcYz6zQ7QED7so4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzQGh1bWFuY29ubmVjdG9tZS5vcmc.>" <[email protected]<redir.aspx?REF=jshk1TenYW2_OFAVmgA3FXeBzh8uJv8IcYz6zQ7QED7so4vpiSLVCAFtYWlsdG86aGNwLXVzZXJzQGh1bWFuY29ubmVjdG9tZS5vcmc.>> Subject: [HCP-Users] problem with FreeSurfer2CaretConvertAndRegisterNonlinear Dear HCP-users list I am new to the HCP pipeline and I'm experiencing a problem while running PostFreeSurferPipelineBatch.s on Mac-Os. I get the following error message: While running: /Applications/workbench/bin_macosx64/../macosx64_apps/wb_command.app/Contents/MacOS/wb_command -surface-distortion /Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.sphere.native.surf.gii /Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.sphere.reg.reg_LR.native.surf.gii /Users/MC/subjects/Subject1/MNINonLinear/Native/Subject1.L.Strain_FS.native.shape.gii -local-affine-method ERROR: Unexpected parameter: -local-affine-method Can anybody help? Thanks and best wishes Mara ___________________________________________________________ This email has been scanned by MessageLabs' Email Security System on behalf of the Brighton & Sussex Medical School. For more information see: https://staff.brighton.ac.uk/is/computing/Pages/Email/spam.aspx<redir.aspx?REF=bN6Bncvdp3-BtOAE_sesOKNGYhW92ysczV9DpJD5kfTso4vpiSLVCAFodHRwczovL3N0YWZmLmJyaWdodG9uLmFjLnVrL2lzL2NvbXB1dGluZy9QYWdlcy9FbWFpbC9zcGFtLmFzcHg.> _______________________________________________ HCP-Users mailing list [email protected]<redir.aspx?REF=35DARf25ePtMxv2eCP3b3b5qXcXaOuqc4oSEDpxpWurso4vpiSLVCAFtYWlsdG86SENQLVVzZXJzQGh1bWFuY29ubmVjdG9tZS5vcmc.> http://lists.humanconnectome.org/mailman/listinfo/hcp-users<redir.aspx?REF=r84Kj7Zqnq971AmNe_SJmqwOgOW_1kCwiXRfh_afvsnso4vpiSLVCAFodHRwOi8vbGlzdHMuaHVtYW5jb25uZWN0b21lLm9yZy9tYWlsbWFuL2xpc3RpbmZvL2hjcC11c2Vycw..> ___________________________________________________________ This email has been scanned by MessageLabs' Email Security System on behalf of the Brighton & Sussex Medical School. For more information see: https://staff.brighton.ac.uk/is/computing/Pages/Email/spam.aspx ___________________________________________________________ This email has been scanned by MessageLabs' Email Security System on behalf of the Brighton & Sussex Medical School. For more information see: https://staff.brighton.ac.uk/is/computing/Pages/Email/spam.aspx _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
